v1.2.4 - Open Source

Bioinformatics Made Simple

A comprehensive platform for running genomic analysis pipelines with CLI, GUI, and web interfaces. Perfect for researchers, labs, and bioinformatics teams.

Get Started View on GitHub

$ biobuntu create-project myproject

Project created successfully

$ biobuntu run workflows/rnaseq.yaml

Pipeline started...

$ biobuntu web

Server running at http://localhost:5000

Powerful Features

Everything you need for modern bioinformatics research and analysis

Multiple Interfaces

CLI, Desktop GUI (BioBuntu Studio), and Web Dashboard for every workflow

Advanced Pipelines

Support for complex workflows with dependencies and parallel execution

Project Management

Create and manage bioinformatics projects with organized structures

Comprehensive Workflows

RNA-seq, variant calling, metagenomics, and quality control pipelines

Tool Integration

Wrappers for FastQC, BWA, GATK, HISAT2, Samtools, and more

Remote Lab Support

API endpoints for remote pipeline execution with job tracking

Installation Methods

Choose the installation method that works best for you

From PyPI

Install from Python Package Index

pip install biobuntu

From Source

Build and install from source code

git clone https://github.com/biobuntu/biobuntu.git cd biobuntu pip install -e .

Debian/Ubuntu

Install from .deb package

sudo dpkg -i biobuntu_0.1.0_all.deb sudo apt-get install -f

Conda

Install via conda package manager

conda install -c biobuntu biobuntu

Quick Start

1

Create a Project

biobuntu create-project myproject \ --description "RNA-seq analysis"

Initialize a new bioinformatics project

2

Run a Pipeline

biobuntu run workflows/rnaseq.yaml \ --project myproject \ --input sample.fastq

Execute your bioinformatics workflow

3

Access Results

biobuntu web # Open http://localhost:5000

View results in web dashboard

Ready to Get Started?

Install BioBuntu today and streamline your bioinformatics workflows

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